Impact of mode of birth and perinatal antibiotics on infant gut microbiota and health: a systematic review and meta-analysis - Report - MDSpire

Impact of mode of birth and perinatal antibiotics on infant gut microbiota and health: a systematic review and meta-analysis

  • By

  • Heidi Singleton

  • Anna Mantzouratou

  • Rabeea Maqsood

  • Hayley Brown

  • Stevie Corbin-Clarke

  • Christopher Long

  • Minesh Khashu

  • July 3, 2026

  • 0 min

Share

Clinical Report: Effects of Birth Method and Perinatal Antibiotic Use on Infant Gut Microbiome

Overview

This systematic review and meta-analysis evaluated the impact of birth method and perinatal antibiotic exposure on infant gut microbiota. Findings indicate that caesarean delivery and antibiotic exposure are associated with reduced microbial diversity and altered gut microbiota composition.

Background

The gut microbiota is crucial for immune and metabolic health, with its development beginning at birth. Caesarean delivery and perinatal antibiotic exposure can disrupt this early microbial assembly.

Data Highlights

Eleven studies (n=5309 infants) were included in the analysis, revealing no statistically significant difference in bacterial abundance between vaginally delivered and caesarean-born infants.

Key Findings

  • Caesarean delivery and perinatal antibiotic exposure were associated with differences in gut microbiota composition and diversity.
  • No statistically significant difference in bacterial abundance was found between vaginally delivered and caesarean-born infants (mean difference 3.44%, 95% CI −2.00 to 8.89).
  • Among antibiotic-exposed infants, the mean difference in bacterial abundance was −0.31% (95% CI −3.52 to 2.89).
  • Exclusive breastfeeding was identified as a modifying factor.
  • Consistent reductions in microbial diversity and depletion of beneficial taxa like Bacteroides and Bifidobacterium were observed following caesarean birth or antibiotic exposure.
  • The overall certainty of evidence was very low due to imprecision in estimates and limitations of observational data.

Clinical Implications

These findings highlight the importance of considering birth method and antibiotic use in perinatal care.

Conclusion

The study provides insights into the associations between birth method, antibiotic exposure, and gut microbiota.

Related Resources & Content

  1. Frontiers in Pediatrics, 2026 -- Impact of maternal fecal microbiota on the early development of neonatal gut microbial community
  2. Frontiers in Pediatrics, 2026 -- Evaluation of antibiotic consumption and resistance patterns among neonates: a 10-year retrospective study
  3. Open Forum Infectious Diseases -- Colonization in Mothers, Perinatal Transmission, and Neonatal Acquisition of Resistant Enterobacterales
  4. Drug Safety — Impact of Antibiotic Exposure During Pregnancy and Early Childhood on Autism and ADHD Risk: Findings from a Swedish Cohort Study
  5. Prevention of Group B Streptococcal Early-Onset Disease in Newborns | ACOG
  6. Interim Guideline for the Detection and Identification of Group B Streptococcus
  7. Management of Neonates Born at ≥35 0/7 Weeks’ Gestation With Suspected or Proven Early-Onset Bacterial Sepsis | Pediatrics | American Academy of Pediatrics
  8. Comparing early-onset sepsis risk: risk calculator, American Academy of Pediatrics guidelines, and local care | Pediatric Research
  9. Update to the Neonatal Early-Onset Sepsis Calculator Utilizing a Contemporary Cohort | Pediatrics | American Academy of Pediatrics
  10. Antibiotic Stewardship in Pediatrics | Pediatrics | American Academy of Pediatrics
  11. WHO releases new target product profile for diagnostic tests to detect serious bacterial infections in young infants
  12. Early-Onset Neonatal Sepsis Surveillance and Trends | ABCs | CDC
  13. Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy term infants | Microbiome | Springer Nature Link
  14. Influence of perinatal antibiotic on neonatal gut microbiota: a prospective cohort study | BMC Pediatrics | Springer Nature Link
  15. Gut microbiota development, antibiotic resistome, and related perinatal factors in early infancy | mSystems
  16. Mother-to-infant vertical transmission in early life: a systematic review and proportional meta-analysis of Bifidobacterium strain transmissibility | npj Biofilms and Microbiomes
  17. The impact of maternal microbial transfer on the infant gut microbiome after cesarean delivery: a systematic review - ScienceDirect
  18. Impact of vaginal seeding on the gut microbiome of infants born via cesarean section: A systematic review - ScienceDirect
  19. Vaginal Seeding | ACOG
  20. Risks of Infectious Diseases in Newborns Exposed to Alternative Perinatal Practices | Pediatrics | American Academy of Pediatrics

Original Source(s)

Related Content