NephroNet: a calibration-aware, patient-disjoint benchmark for multiclass kidney CT classification with a compact depthwise-separable CNN - Report - MDSpire

NephroNet: a calibration-aware, patient-disjoint benchmark for multiclass kidney CT classification with a compact depthwise-separable CNN

  • By

  • Yuxuan Dong

  • Masrufa Akter Muni

  • Rakibul Islam

  • Saima Tasnim

  • Sanjida Shahid Juthi

  • Md Jahirul Islam

  • Md AL Fassi

  • Md Sharif Robbani

  • Sufia Zareen

  • Yu Chen Hiu Lee

  • June 23, 2026

  • 0 min

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Clinical Report: NephroNet: A Patient-Disjoint Benchmark for Kidney CT Classification

Overview

NephroNet, a depthwise-separable CNN, achieves an accuracy of 0.9997 in a validation set. This study addresses slice-level leakage and probability calibration in deep learning applications for renal imaging.

Background

Computed tomography (CT) is the primary imaging modality for renal pathology, yet challenges such as slice-level leakage and inadequate probability calibration hinder the effectiveness of deep learning models. This study introduces a patient-disjoint benchmark for classifying renal CT images into four categories: Normal, Cyst, Tumor, and Stone, using a multicenter dataset.

Data Highlights

MetricValue95% CI
Accuracy0.99970.9984–1.0000
Macro-AUC0.99690.9953–0.9983
Brier Score0.0007N/A
ECE0.0021N/A

Key Findings

  • NephroNet achieved an accuracy of 0.9997 in the validation set.
  • Utilized a multicenter dataset of 12,446 images for training and validation.
  • Implemented a patient-disjoint hold-out methodology to prevent slice-level leakage.
  • Demonstrated performance compared to budget-matched CNN and transformer baseline models.
  • Emphasized the importance of probability calibration.

Clinical Implications

The findings emphasize the necessity for external validation and calibration in diverse clinical settings.

Conclusion

Further validation is required to confirm the applicability of NephroNet in broader clinical contexts.

Related Resources & Content

  1. European Radiology, 2024 -- Ensemble Neural Networks for Renal Tumor Segmentation, Visualization, and Confidence Assessment in Surgical Resection Patients
  2. Frontiers in Digital Health, 2026 -- A patient-aware benchmarking of CNN and transformer architectures for breast cancer histopathology classification
  3. Frontiers in Medicine, 2026 -- PruDensNet: a parameter efficient depthwise separable CNN for MRI-based brain tumor classification
  4. 2026 EAU Guidelines on Renal Cell Carcinoma
  5. 2026 EAU Guidelines on Urolithiasis
  6. npj Digital Medicine — Hierarchical Mamba-CNN Transducer for Enhanced Liver Tumor Segmentation in CT Imaging
  7. ACR Appropriateness Criteria® Acute Onset Flank Pain-Suspicion of Stone Disease (Urolithiasis)
  8. https://d56bochluxqnz.cloudfront.net/documents/full-guideline/EAU-Guidelines-on-Renal-Cell-Carcinoma-2026.pdf
  9. https://d56bochluxqnz.cloudfront.net/documents/full-guideline/EAU-Guidelines-on-Urolithiasis-2026.pdf
  10. Diagnostic performance of artificial intelligence in detection of renal cell carcinoma: a systematic review and meta-analysis | BMC Cancer | Springer Nature Link
  11. Updates to Microhematuria: AUA/SUFU Guideline (2025) | Journal of Urology

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