Clinical Report: Investigation of Deletions in APC Promoter 1B Among Russian Families
Overview
This study investigates deletions in the APC promoter 1B among Russian families affected by familial adenomatous polyposis (FAP). The findings indicate no evidence of a founder effect in this population, with unique deletion boundaries identified in each patient. Whole-genome sequencing was performed on five unrelated patients with identified deletions.
Background
Familial adenomatous polyposis (FAP) is a hereditary cancer syndrome that leads to a high risk of colorectal cancer if untreated. The APC gene is crucial in this condition, with pathogenic variants being the primary cause. Understanding the genetic variations in different populations can aid in diagnosing and managing FAP effectively. The estimated incidence of FAP is around 1 in 10,000 live births, and germline pathogenic variants in the APC gene are found in 70 to 90 percent of patients.
Data Highlights
Deletions in the APC 1B promoter ranged from approximately 3 kbp to 122 kbp. Each deletion was unique, with no identical boundaries identified among patients.
Key Findings
Deletions in the APC 1B promoter ranged from approximately 3 kbp to 122 kbp.
No correlation was found between deletion size and age of onset or disease severity.
Each deletion was unique, with no identical boundaries identified among patients.
Four patients had right deletion breakpoints located within a 1 kbp region downstream from the 1B promoter.
No evidence of a founder effect was observed in the Russian population studied.
Clinical Implications
Accurate identification of deletion breakpoints can aid in genetic counseling and management strategies for affected families.
Conclusion
The investigation into APC promoter 1B deletions in Russian families with FAP reveals unique genetic alterations without a founder effect.
by Aleksey S. Tsukanov, Sergey I. Achkasov, Anna N. Loginova, Dmitry Yu. Pikunov, Vitaly P. Shubin, Aleksandra S. Monakhova, Anastasiia V. Kashchenko, Yulia M. Suvorova, Evgeny I. Klimuk, Konstantin V. Severinov