Endo-MedSAM: a promptable vision foundation model adaptation for uterus segmentation on pelvic MRI in endometriosis - Report - MDSpire

Endo-MedSAM: a promptable vision foundation model adaptation for uterus segmentation on pelvic MRI in endometriosis

  • By

  • Rawan AlSaad

  • Shima Albasha

  • Rajat Thomas

  • May 25, 2026

  • 0 min

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Clinical Report: Endo-MedSAM for Uterine Segmentation in Pelvic MRI

Overview

Endo-MedSAM, an adaptation of MedSAM-2, demonstrated improved uterus segmentation in pelvic MRI for endometriosis management. It achieved significant performance enhancements over zero-shot MedSAM-2, particularly with bounding-box prompts.

Background

Endometriosis affects approximately 10% of women of reproductive age and is a leading cause of chronic pelvic pain and subfertility. Accurate diagnosis and management are critical, yet often delayed due to the complexity of symptoms and imaging findings. Automated uterus segmentation in pelvic MRI can enhance diagnostic accuracy and streamline treatment planning.

Data Highlights

ConfigurationMean 3D Dice Score
Bounding-box prompts0.81–0.88
1-click point prompts0.68–0.76

Key Findings

  • Endo-MedSAM achieved mean 3D Dice scores of 0.81–0.88 with bounding-box prompts.
  • Improvements of approximately 0.27–0.34 in 3D Dice scores were noted compared to zero-shot MedSAM-2.
  • Performance was consistent across multicenter and single-center settings.
  • Endo-MedSAM supports both bounding-box and low-interaction point prompting.
  • Automated segmentation can reduce manual contouring burden and standardize measurements across different imaging protocols.

Clinical Implications

The implementation of Endo-MedSAM can facilitate faster and more reproducible uterus delineation in clinical practice. This may lead to improved consistency in volumetric assessments and enhance the overall management of endometriosis.

Conclusion

Endo-MedSAM represents a significant advancement in automated uterus segmentation for pelvic MRI, offering robust performance that can enhance endometriosis care.

Related Resources & Content

  1. ACOG, ACOG News Releases, 2026 -- ACOG Publishes New Endometriosis Clinical Guidance
  2. ESUR, European Radiology, 2025 -- ESUR consensus MRI for endometriosis: indications, reporting, and classifications
  3. npj Digital Medicine — Multi-View Collaborative Learning for Semi-Supervised CT Segmentation of Liver Tumors in Resource-Limited Environments Using Foundation Model Guidance
  4. Surgical Endoscopy — Utilizing Deep Learning for Pelvic MRI Analysis to Evaluate Surgical Complexity in Total Mesorectal Excision
  5. npj Digital Medicine — Anatomy-guided visual prompt tuning for cross-modal breast cancer understanding
  6. Techniques in Coloproctology — Automated Identification of Male Pelvic Floor Soft Tissue Anatomy for Simulation and Morphological Evaluation in Lower Rectal Cancer Procedures
  7. ACOG Publishes New Endometriosis Clinical Guidance, Aiming to Shorten Time to Diagnosis and Improve Access to Care | ACOG
  8. ESUR consensus MRI for endometriosis: indications, reporting, and classifications | European Radiology | Springer Nature Link
  9. The Diagnostic Accuracy of Magnetic Resonance Imaging Versus Transvaginal Ultrasound in Deep Infiltrating Endometriosis and Their Impact on Surgical Decision-Making: A Systematic Review | MDPI

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