Machine learning-enabled spatial multi-omics uncovers lactate-driven targets and tumor microenvironmental reprogramming in cancer
By
Yingzheng Tan
Wenliang Tan
Yanchao Liang
Yunzhu Long
Shuanghua Chen
Qihao Hu
Yangjing Ou
Jingli Fu
Huan Chen
Fangyuan Ren
Jun Ye
Qing Zhou
Sheng Li
Xiaojin He
Qianqian Wang
Yueming Shen
Haiyuan Lu
Daichao Wu
Anbo Gao
Xun Chen
Yukun Li
December 30, 2025
Clinical Scorecard: Spatial Multi-Omics Enhanced by Machine Learning Reveals Lactate-Driven Therapeutic Targets and Reprogramming of the Tumor Microenvironment in Cancer
At a Glance
Category Detail
Condition Lung adenocarcinoma (LUAD)
Key Mechanisms Lactate accumulation drives metabolic reprogramming, angiogenesis, immune suppression, and microenvironment remodeling
Target Population Patients with lung adenocarcinoma exhibiting variable tumor lactate levels
Care Setting Oncology clinical and research settings focusing on tumor microenvironment and metabolic profiling
Key Highlights
High lactate tumors show increased epithelial and fibroblast abundance; low lactate tumors enriched in T/NK cells and monocytes/macrophages Spatial metabolomics reveals cell-type–restricted lactate distribution, with endothelial cells minimally accumulating lactate but showing angiogenic signatures in high-lactate tumors Machine learning models identify endothelial and fibroblast programs as key determinants of high lactate states and poor clinical outcomes
Guideline-Based Recommendations
Diagnosis
Integrate single-cell transcriptomics, spatial transcriptomics, and spatial metabolomics for comprehensive tumor profiling Assess tumor lactate levels to stratify metabolic heterogeneity and microenvironmental states
Management
Target lactate-centered pathways to modulate angiogenesis and immune suppression in LUAD Consider metabolic reprogramming as a therapeutic axis in high-lactate tumors
Monitoring & Follow-up
Use multi-omics and machine learning frameworks to monitor tumor microenvironment changes and therapeutic response Evaluate endothelial and fibroblast activity as biomarkers for prognosis
Risks
High lactate microenvironments are associated with immune suppression and poor prognosis Lactate-driven angiogenesis may contribute to tumor progression and therapy resistance
Patient & Prescribing Data
LUAD patients stratified by systemic and tumor lactate levels
Therapies targeting lactate metabolism and its downstream effects on endothelial and fibroblast cells may improve outcomes in high-lactate tumors
Clinical Best Practices
Employ integrative multi-omics approaches to capture spatial and cellular heterogeneity of lactate in tumors Leverage machine learning models to identify key metabolic and cellular programs driving tumor progression Focus on lactate-mediated immune and vascular interactions for developing precision therapies
References