Single-Cell and Plasma Proteomics Do Not Differentiate Patients With and Without SARS-CoV-2 Antigenemia in Convalescence in a Cohort of 100 Patients - Scorecard - MDSpire

Single-Cell and Plasma Proteomics Do Not Differentiate Patients With and Without SARS-CoV-2 Antigenemia in Convalescence in a Cohort of 100 Patients

  • By

  • Shaun Pienkos

  • Zoe Swank

  • Rebecca E Hamlin

  • Mallika Rao

  • Phillip Grant

  • Hector Bonilla

  • Karen Jacobson

  • Prasanna Jagannathan

  • Upinder Singh

  • David R Walt

  • Aruna Subramanian

  • Catherine Blish

  • August 26, 2025

  • 0 min

Share

Clinical Scorecard: Proteomic Analysis of Single Cells and Plasma Fails to Distinguish Between SARS-CoV-2 Antigenemia and Non-Antigenemia Patients During Convalescence in a Study of 100 Individuals

At a Glance

CategoryDetail
ConditionPost-acute SARS-CoV-2 infection and Long COVID (LC)
Key MechanismsPersistence of SARS-CoV-2 antigens (S1, spike, N) in plasma; immune dysregulation; viral antigenemia
Target PopulationIndividuals recovering from acute SARS-CoV-2 infection, including those with and without Long COVID symptoms
Care SettingOutpatient convalescent follow-up and research settings

Key Highlights

  • SARS-CoV-2 antigens detected in plasma up to 12 months post-infection in 14% of patients.
  • No significant differences in plasma proteins or immune cell protein expression between antigenemic and non-antigenemic patients.
  • Antigenemia rates did not correlate with presence or absence of Long COVID symptoms.

Guideline-Based Recommendations

Diagnosis

  • Use of single molecule array (Simoa) assays to detect SARS-CoV-2 S1, spike, and N antigens in plasma during convalescence.

Management

  • No current evidence supports using plasma antigenemia status to guide Long COVID management.
  • Antiviral treatment (e.g., remdesivir) during acute infection may reduce early antigenemia but effect not sustained at 12 months.

Monitoring & Follow-up

  • Longitudinal assessment of symptoms and plasma antigen levels at 3 and 12 months post-infection.
  • Symptom questionnaires, interviews, and physical exams recommended for Long COVID evaluation.

Risks

  • Persistent antigenemia detected in some recovered patients without clear clinical consequences.
  • No increased risk of Long COVID symptoms associated with antigenemia identified.

Patient & Prescribing Data

100 patients assessed approximately 3 and 12 months after acute SARS-CoV-2 infection, including vaccinated and unvaccinated individuals.

Remdesivir during acute infection associated with lower antigenemia at 3 months but not at 12 months; vaccination status did not affect antigenemia rates at 12 months.

Clinical Best Practices

  • Assess Long COVID symptoms comprehensively using standardized definitions and multi-modal evaluations.
  • Interpret plasma antigenemia cautiously as it does not distinguish Long COVID status or immune dysregulation.
  • Consider antiviral treatment during acute infection as potentially reducing early antigen persistence.
  • Continue research to elucidate the clinical significance of persistent SARS-CoV-2 antigenemia.

References

Original Source(s)

Related Content