The 60 Percent Diagnostic Gap in M/E - Scorecard - MDSpire

The 60 Percent Diagnostic Gap in M/E

  • By

  • Jessica Allerton

  • March 12, 2026

  • 6 min

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Clinical Scorecard: The 60 Percent Diagnostic Gap in M/E

At a Glance

CategoryDetail
ConditionMeningitis/Encephalitis (M/E)
Key MechanismsComplex interplay of infectious disease, neurology, and immunology; diagnostic challenges due to nonspecific symptoms and limited testing capacity.
Target PopulationPatients with suspected meningitis or encephalitis, particularly immunocompromised individuals and those with atypical presentations.
Care SettingWell-resourced hospitals and clinical settings with access to advanced diagnostic tools.

Key Highlights

  • Over 60% of M/E cases remain undiagnosed after comprehensive evaluation.
  • Traditional diagnostics are hypothesis-driven and limited in scope.
  • Early use of comprehensive metagenomic next-generation sequencing (mNGS) can reduce diagnostic time and additional testing.
  • mNGS testing can decrease microbiologic tests ordered by over 60% in infectious cases.
  • Collaboration among laboratory, neurology, and infectious disease teams is crucial for mNGS result interpretation.

Guideline-Based Recommendations

Diagnosis

  • Consider mNGS for patients with severe or atypical neurologic presentations.
  • Use mNGS when culture-negative CSF persists with concern for infection.

Management

  • Integrate mNGS into the diagnostic pathway to inform treatment decisions.
  • Narrow empiric therapy based on identified pathogens from mNGS results.

Monitoring & Follow-up

  • Evaluate mNGS results in clinical context to guide ongoing management.

Risks

  • Contamination control is essential due to the high sensitivity of mNGS.

Patient & Prescribing Data

Patients with suspected infectious or autoimmune causes of meningitis/encephalitis.

Earlier mNGS testing may influence hospital length of stay and timing of immunotherapy.

Clinical Best Practices

  • Maintain strict pre-analytic handling and appropriate negative controls for mNGS.
  • Ensure standardized reporting and clinician education for accurate result interpretation.
  • Develop clear ordering criteria for mNGS within diagnostic workflows.

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