Spatial transcriptomics and immunophenotyping uncover chronic inflammation-induced immune adaptations favoring dysplasia development in patients at risk of colitis-associated cancer - Scorecard - MDSpire

Spatial transcriptomics and immunophenotyping uncover chronic inflammation-induced immune adaptations favoring dysplasia development in patients at risk of colitis-associated cancer

  • By

  • Sofía Frigerio

  • Hina N Khan

  • Mojtaba Amini

  • Bregje Mol

  • Andra Neefjes-Borst

  • Manon E Wildenberg

  • Cyriel Y Ponsioen

  • Geert R D’Haens

  • Yvonne Vercoulen

  • Joep Grootjans

  • October 13, 2025

  • 0 min

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Clinical Scorecard: Spatial Transcriptomics and Immune Profiling Reveal Immune Adaptations Induced by Chronic Inflammation That Promote Dysplasia in Colitis-Associated Cancer Risk Patients

At a Glance

CategoryDetail
ConditionColitis-associated cancer (CAC) in inflammatory bowel disease (IBD)
Key MechanismsChronic inflammation induces endogenous anti-inflammatory mechanisms including increased IL-10 production and decreased CD8+ intraepithelial T cells, reducing immunosurveillance and promoting dysplasia
Target PopulationPatients with inflammatory bowel disease at risk for developing colitis-associated cancer
Care SettingGastroenterology clinics with access to colonoscopic surveillance and histopathological evaluation

Key Highlights

  • Histologically uninflamed colon mucosa in CAC patients shows upregulated metabolism and stress response pathways indicating ongoing epithelial stress.
  • Increased IL-10 expression by lamina propria IgA+ plasma cells and CD163+ macrophages represents endogenous anti-inflammatory adaptations.
  • Reduced CD8+ intraepithelial lymphocyte density and granzyme B levels correlate with decreased immunosurveillance and higher CAC susceptibility.

Guideline-Based Recommendations

Diagnosis

  • Use histological assessment to identify uninflamed, non-dysplastic mucosa adjacent to lesions in IBD patients.
  • Employ spatial transcriptomics and immunophenotyping to detect immune adaptations in mucosa at risk for CAC.

Management

  • Maintain regular colonoscopic surveillance in IBD patients, especially those with long-standing disease or primary sclerosing cholangitis.
  • Consider monitoring immune cell profiles, including CD8+ intraepithelial lymphocytes, to stratify CAC risk.

Monitoring & Follow-up

  • Perform yearly colonoscopic biopsies of normal-appearing mucosa for histological and immunological evaluation.
  • Track changes in anti-inflammatory cytokine expression and CD8+ IEL density over time.

Risks

  • Chronic inflammation-induced immunosuppressive microenvironment may undermine immunosurveillance, increasing dysplasia and CAC risk.
  • Reduced CD8+ IELs and increased IL-10 may limit inflammation but favor tumorigenesis.

Patient & Prescribing Data

IBD patients undergoing surveillance for dysplasia and CAC risk

Limited biologic exposure noted; immune adaptations occur despite remission, suggesting need for therapies targeting immunosuppressive pathways to improve immunosurveillance.

Clinical Best Practices

  • Integrate spatial transcriptomics and multiplex immunophenotyping for early detection of immune alterations in IBD mucosa.
  • Focus on both pro-inflammatory and anti-inflammatory immune pathways to understand CAC risk.
  • Use CD8+ intraepithelial lymphocyte density as a potential biomarker for CAC susceptibility in IBD patients.

References

Original Source(s)

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