CCR1-mediated monocyte chemotaxis in the immunopathology of primary Sjögren’s syndrome: multi-omics integration analysis and computational target prioritization implicating Polygonatum odoratum - Summary - MDSpire
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Investigating CCR1's Role in Monocyte Migration within the Immunopathology of Primary Sjögren’s Syndrome: A Multi-Omics Approach and Computational Analysis Highlighting Polygonatum odoratum as a Potential Therapeutic Target
To explore the potential association of CCR1 with pSS immunopathology and to computationally assess its candidacy as a predicted target of Polygonatum odoratum.
Approach:
Transcriptomic Analysis: Utilized transcriptomic datasets (GSE51092, GSE66795) and single-cell RNA sequencing data (GSE253568) from GEO to assess CCR1 expression.
Network Pharmacology: Screened active component targets of P. odoratum and identified candidate therapeutic targets using a 'three-dimensional intersection' strategy.
Single-Cell Analysis: Performed monocyte subtyping, pseudotime trajectory, SCENIC transcription factor network, and CellChat cell communication analyses.
Molecular Docking: Predicted drug-target binding affinity of P. odoratum components to CCR1.
RT-qPCR Validation: Validated findings in clinical samples from pSS patients (n = 65) and healthy controls (n = 48).
Key Findings:
CCR1 was significantly upregulated in pSS patients (AUC = 0.758) and positively correlated with serum IgG levels (R = 0.49, P = 0.0057).
Single-cell analysis showed CCR1 was highly expressed in classical monocytes, with CCR1-positive monocytes expanded in pSS (P = 0.0079).
SCENIC analysis predicted STAT1 and EGR1 as upstream transcription factors associated with CCR1 expression.
Moupinamide from P. odoratum showed predicted binding affinity with CCR1.
Interpretation:
The study provides exploratory evidence for CCR1's role in pSS immunopathology, particularly in monocyte recruitment and differentiation.
Limitations:
The findings require experimental validation to confirm the computational predictions.
The study is based on publicly available datasets, which may have inherent limitations.
Conclusion:
This study suggests CCR1 as a candidate therapeutic target in pSS, warranting further investigation into treatment strategies involving P. odoratum.