Metagenomic fingerprints in bronchoalveolar lavage differentiate pulmonary diseases - Summary - MDSpire

Metagenomic fingerprints in bronchoalveolar lavage differentiate pulmonary diseases

  • By

  • Dongsheng Han

  • Chang Liu

  • Bin Yang

  • Fei Yu

  • Huifang Liu

  • Bin Lou

  • Yifei Shen

  • Hui Tang

  • Hua Zhou

  • Shufa Zheng

  • Yu Chen

  • October 7, 2025

  • 0 min

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Objective:

To develop a multimodal machine learning-based diagnostic approach for differentiating lung cancer from pulmonary infections using bronchoalveolar lavage fluid (BALF) metagenomic next-generation sequencing (mNGS) data, highlighting its significance in clinical diagnostics.

Key Findings:
  • Model VI achieved an AUC of 0.937 in the training cohort and 0.847 in the test cohort, indicating strong diagnostic performance.
  • Rule-in/rule-out strategy improved accuracy to 0.896 for tuberculosis, 0.915 for fungal, and 0.907 for bacterial infections, demonstrating clinical relevance.
  • Distinct microbial profiles and host responses were identified between lung cancer and pulmonary infections, suggesting unique diagnostic markers.
Interpretation:

The findings suggest that mNGS-based multimodal analysis can serve as a cost-effective and rapid diagnostic tool for distinguishing lung cancer from pulmonary infections, potentially transforming clinical decision-making.

Limitations:
  • Study limited to a single center and specific patient demographics, which may affect generalizability.
  • Further validation in diverse populations and settings is needed to confirm findings.
Conclusion:

mNGS represents a promising approach for early and accurate differential diagnosis of lung cancer and pulmonary infections, potentially improving patient management and outcomes.

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