Interpretable machine learning-driven multi-omics risk stratification and drug repurposing nominates Treg/Th17 with gluconeogenesis/lactylation integration as a prognostic and druggable biomarker for glioblastoma patients - Summary - MDSpire
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Interpretable machine learning-driven multi-omics risk stratification and drug repurposing nominates Treg/Th17 with gluconeogenesis/lactylation integration as a prognostic and druggable biomarker for glioblastoma patients
To gain insights into the mechanisms of Treg/Th17 balance and gluconeogenesis/lactylation in glioblastoma (GBM) progression.
Approach:
Data Integration: Integrated GBM cerebral public bulk profiles from GEO database with gluconeogenesis and lactylation gene lists to identify shared DEGs.
Risk Stratification Model: Developed a TGL-associated risk stratification model using Lasso-cox regression analysis in TCGA-GBM training cohort and validated in GEO dataset.
Heterogeneity Assessment: Assessed immune and intratumoral heterogeneity between high-risk and low-risk groups.
Hub Gene Identification: Utilized SHAP for interpretability of Lasso-cox regression and identified a TGL-associated hub gene.
Therapeutic Strategy: Performed ridge regression and molecular docking to identify optimal therapeutic strategies targeting the hub gene.
Key Findings:
Integrated TGL can guide risk stratification and prognostic model construction for GBM patients.
ODC1 is identified as an up-regulated TGL-related regulator involved in GBM pathogenesis.
THZ-2-102–1 is proposed as a potential drug targeting ODC1 for GBM treatment.
Interpretation:
The study integrates TGL-associated gene signatures in GBM patient risk stratification and therapeutic frameworks using machine learning and multi-omics.
Conclusion:
This study integrates TGL-associated gene signatures in GBM patient risk stratification and therapeutic frameworks.