Integrative genetic and expression profiling prioritizes LIPA in mononuclear phagocytes as a candidate regulator of carotid plaque - Summary - MDSpire

Integrative genetic and expression profiling prioritizes LIPA in mononuclear phagocytes as a candidate regulator of carotid plaque

  • By

  • Zhuyuan Yu

  • Shuhua Mao

  • Ying Song

  • Xiangyuan Meng

  • Jianing Yu

  • Ziyu Zong

  • Tianlin Gao

  • Hao Chen

  • June 19, 2026

  • 0 min

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Objective:

To identify carotid plaque candidate genes and evaluate their therapeutic potential using genetic and transcriptomic approaches.

Approach:
    Key Findings:
    • 22candidategenesforcarotidplaquewereidentified.LIPA_Mono_Cshowedaconsistentcausalassociationwithincreasedcarotidplaquerisk.LIPAwashighlyexpressedinmononuclearphagocytesofcarotidplaquetissues.Invitroexperimentsconfirmedthatoxidizedlow-densitylipoproteinupregulatedLIPAinmacrophages.LIPAknockdownalleviatedlipidaccumulationandsuppressedcomplementactivation.InsilicoknockoutofLIPArevealedsignificantenrichmentofthecomplementandcoagulationcascades,andCellChatanalysissuggestedapotentialSPP1-CD44-mediatedinteractionbetweenLIPA-expressingmononuclearphagocytesandTcells.
    Interpretation:

    LIPA may be associated with lipid accumulation, complement-related activation, and immune regulation in carotid plaque, but these findings require further validation.

    Limitations:
    • FurthervalidationisneededtoconfirmthetranslationalrelevanceofLIPA-relatedmodulation.Thestudyprimarilyfocusesongeneticandtranscriptomicdatawithoutextensiveclinicalvalidation.
    Conclusion:

    The study prioritizes LIPA as a candidate gene for carotid plaque, suggesting its role in lipid metabolism and immune regulation, pending further validation.

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