Structural and functional dissection of neutralisation differences among SARS-CoV-2 variants using antigenicity prediction and CR3022 binding analysis - Summary - MDSpire

Structural and functional dissection of neutralisation differences among SARS-CoV-2 variants using antigenicity prediction and CR3022 binding analysis

  • By

  • Jyoti Sawant

  • Ajit Patil

  • Madhuri Thakar

  • Swarali Kurle

  • July 6, 2026

  • 0 min

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Objective:

To evaluate neutralization responses to SARS-CoV-2 variants and understand the structural and functional variations in antibody recognition.

Approach:
  • Neutralisation Assays: Utilized a pseudovirus-based luciferase reporter assay to assess neutralization responses across different cohorts and variants.
  • Cohort Analysis: Included plasma samples from naturally infected, vaccinated, and vaccinated-infected individuals.
  • Computational Analysis: Conducted epitope prediction, antigenicity profiling, structural modeling, and docking simulations of CR3022 with variant RBDs.
Key Findings:
  • Neutralisation responses varied by cohort and viral variant, with vaccinated individuals showing higher neutralisation titres.
  • B.1.617.2 and B.1.1.529 variants exhibited reduced susceptibility to neutralisation by infection-elicited antibodies.
  • Computational analyses revealed variant-associated differences in predicted antigenicity and epitope landscapes within the RBD and NTD.
Interpretation:

The study integrates experimental and computational approaches to characterize SARS-CoV-2 variant-specific neutralisation.

Limitations:
  • The study does not establish a direct mechanistic relationship between structural changes and neutralisation susceptibility.
  • Findings are based on specific cohorts and may not be generalizable to all populations.
Conclusion:

This research provides insights into differences in antibody responses across SARS-CoV-2 variants.

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