Integrative single-cell and bulk transcriptomic analyses identify DRAM1 as a candidate gene from fibroblast-associated transcriptional programs in colorectal cancer - Summary - MDSpire

Integrative single-cell and bulk transcriptomic analyses identify DRAM1 as a candidate gene from fibroblast-associated transcriptional programs in colorectal cancer

  • By

  • Rudong Li

  • Zhipeng Zhao

  • Hengyu Liu

  • Chao Zhang

  • Zhicheng Wang

  • Siyi Wang

  • Xudong Wang

  • June 11, 2026

  • 0 min

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Objective:

To characterize fibroblast-associated transcriptional programs in colorectal cancer (CRC) and identify candidate genes with potential biological relevance, which may inform therapeutic strategies.

Approach:
    Key Findings:
    • Identified 17 cell clusters corresponding to 10 major cell lineages in CRC and adjacent normal tissues, highlighting cellular diversity.
    • Detected extensive signaling interactions among stromal, epithelial, endothelial, and immune cell populations, emphasizing the complexity of the tumor microenvironment.
    • Extracted 123 candidate genes from 31 fibroblast-associated modules identified by hdWGCNA, providing a foundation for further research.
    • DRAM1 was selected for validation and showed elevated expression in CRC tissues and cell lines, indicating its potential significance.
    • Loss-of-function assays indicated that silencing DRAM1 enhanced CRC cell proliferation, migration, invasion, and xenograft growth, suggesting its role in tumor suppression.
    Interpretation:

    Increased DRAM1 expression may reflect a compensatory stress-response program, indicating its potential role in tumor biology beyond a purely oncogenic function.

    Limitations:
    • The direct role of DRAM1 in fibroblast-mediated stromal-immune regulation requires further investigation to fully understand its implications in CRC.
    Conclusion:

    This study identifies DRAM1 as a candidate gene linked to fibroblast-related transcriptional networks in CRC, suggesting a tumor-restraining role in epithelial tumor cell models, which may have therapeutic implications.

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